The thought processes leading up to them surrendering control of the ship and becoming hostages really didn't make convincing sense. So you're going to risk everybody getting killed and give up all your power on a harebrained scheme that may or may not work, and in a best case scenario still leaves you with a major disadvantage you didn't have before (being physically captured)? Ok, that's great. Should've just vented the stupid fucking chamber. After the early hostage exchange they had like seven guys left on the wrong side, so knocking them out would seem to be a hell of a lot less risky towards the greater safety than fucking surrendering everybody. Young consistently makes like the worst imaginable decisions, and that would be less annoying if other characters would call him out on it, but so far that just hasn't been happening. It's pretty easy to see how this cliffhanger will get resolved. Eli lets the soldiers back in just in time, the Lucian medic guy saves TJ, Chloe sleeps for a little bit. The only actual cliffhanger is in the military group's impending execution, and they shouldn't have tried to play off the rest of the characters as being in dire damage, because it merely came across as silly (I facepalmed at the end).
All in all, a decent first season with some major, gaping weak points, but I don't regret the investment of time yet. There's definitely the potential for improvement, but also the potential to turn to unadulterated shit in short order.